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use RosalindResult;
use constants::FASTA_LABEL_SYMBOL;
fn is_fasta_label(s: &str) -> bool {
s.contains(FASTA_LABEL_SYMBOL)
}
pub fn parse_fasta_dataset(dataset: &str) -> RosalindResult<Vec<String>> {
let delimiter: char = '\x00';
let mut buf: String = String::new();
for dataset_line in dataset.lines() {
if is_fasta_label(dataset_line) {
if !buf.is_empty() {
buf.push(delimiter);
}
} else {
buf.push_str(dataset_line.trim());
}
}
Ok(buf.split(delimiter).map(|s| s.to_string()).collect())
}
#[test]
fn it_should_determine_fasta_label() {
assert_eq!(is_fasta_label(">Rosalind_1"), true);
assert_eq!(is_fasta_label("CCTGCGGAAG"), false);
}
#[cfg(test)]
mod tests {
use super::parse_fasta_dataset;
#[test]
fn it_should_parse_fasta_dataset() {
let fasta_dataset = ">Rosalind_1
CCTGCGGAAG
TCCCACTAAT
>Rosalind_2
CCATCGGTAG
ATATCCATTT
>Rosalind_3
CCACCCTCGT
TGGGAACCTG";
let expected_dataset = vec![
"CCTGCGGAAGTCCCACTAAT",
"CCATCGGTAGATATCCATTT",
"CCACCCTCGTTGGGAACCTG",
];
let dataset = parse_fasta_dataset(fasta_dataset).unwrap();
assert_eq!(dataset, expected_dataset);
}
}